Feds Coastal Research Crew Bucks Headwinds

Science - Tech - Tools



21
Mar

Feds Coastal Research Crew Bucks Headwinds

Jim Cloern looked out of an airplane window one day and saw red streaks in the water; crimson patches darkening the grey-green shallows that are San Francisco’s South Bay. A superscientist with the US Geological Survey, he knew something big was happening. The color indicated a red tide, a harmful algal bloom...
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20
Mar

Attention to Outcomes

The new Wetland Regional Monitoring Program, funded through an EPA Region 9 Wetlands Program Development Grant and managed by the San Francisco Estuary Partnership, aims to revolutionize the way that data is collected and shared about one of the Bay Area’s most fragile yet resilient ecosystems -- wetlands. “Monitoring data sits on shelves,” says Heidi Nutters...
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13
Feb

A marriage of robotics and artificial intelligence promises to automate the detection of harmful algal blooms, which can trigger shellfish harvesting bans and fill wildlife rescue centers with sickened animals.

The Imaging FlowCytobot (IFCB) takes water samples around the clock and photographs phytoplankton cells floating within. “It’s got a huge amount of potential for figuring out what plankton is in the water column and monitoring for HABs,” says Alexis Fischer, a postdoctoral fellow at the University of California, Santa Cruz with Raphael Kudela. Fischer and colleagues are building a phytoplankton image classifier already capable of identifying more than 90 percent of cells photographed by IFCB at the Santa Cruz Wharf. The bad actors really stand out in the crowd, Fischer says. “Many of the harmful algal bloom species tend to be larger and more uniquely shaped, which fortunately makes it easier for our classifier to distinguish them.” Phytoplankton from San Francisco...
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13
Dec

Sleuthing Sturgeon Snags

Local green sturgeon are struggling. The population that spawns in the Sacramento –San Joaquin River Delta was declared federally threatened in 2006. Researchers at UC Davis, which hosts the world’s only green sturgeon rearing program, are now trying to figure out why the fish is in trouble. “If we knew how large they are when they’re moving through each portion of the system, we’d know a lot more about the threats they face at each life state, and where we need to put our energy,” says postdoctoral fellow Anna Steel.
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13
Nov

Recent discoveries are promising new weapons against red tides, the massive blooms of microscopic marine algae that are notorious for playing havoc with marine ecosystems.

The culprit behind poisoned seabirds, closed crab fisheries, stranded sea lions, and shellfish poisoning in humans are often diatoms producing the neurotoxin domoic acid. Now, scientists have identified the genes and biochemical processes responsible in diatoms of the genus Pseudo-nitzschia. The finding, published in the journal Science, opens the door to rapid genetic monitoring of algal blooms as a means to spot nascent harmful blooms and track their spread. “By identifying the genes that encode domoic acid production, we are now able to ask questions about what ocean conditions turn these genes on or off,” said lead author Patrick Brunson of the Scripps Institution of Oceanography. The achievement comes not a moment too soon: with algal blooms getting larger and...
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13
Nov

Floods and droughts can cause pools and riffles—and the bugs that live in them—to become more homogenous.

For years, scientists monitoring water quality in streams and rivers have collected mixed samples of aquatic invertebrates from riffles, pools, and transition zones. But UC Santa Barbara stream ecologist David Herbst and his colleagues recently finished a 15-year study of the benthic life in small streams of the central Sierra that examined pools and riffles separately. They found that during flood and drought events, these habitats and their inhabitants become more uniform. But while floods come and go, droughts can have longer-term effects on the biodiversity in the stream. “As stream flows go down, the riffles go dry first,” says Herbst. “The riffle habitat, the richest place in the stream, can be depleted during drought conditions. The habitat itself is...
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20
Mar

SF State Launches New Floating Sentinel

Two banana-yellow buoys anchored along the Tiburon shore will be San Francisco Bay’s sentinels against shifts in water chemistry due to climate change. Known as the Bay Ocean Buoy (BOB) and the Marine Acidification Research Inquiry (MARI), the permanent moorings will provide long-term monitoring of acidity and carbon dioxide levels—key indicators of how the changing ocean will impact Bay chemistry. “It’s taken over three years of perseverance and partnership building to get these instruments into the water, but now we’ll be able to reveal how ocean acidification may be influencing SF Bay now and in the future,” says Karina Nielsen, a San Francisco State Professor of Biology and Director of the Estuary and Ocean Science Center, where the one of...
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18
Mar

Radar Envy

Near the end of 2012, the US Army Corps of Engineers released 28,000 acre-feet of water from Lake Mendocino. Then followed 14 of the driest months on record. The key to managing the drought and deluge cycle of California lies in a better understanding of atmospheric rivers, intense winter storms that transport water from the tropics to the West Coast. Over the last decade California has pumped more than $40 million into the statewide network that tracks these rivers, giving lead times of up to a week.
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13
Dec

Cold Curtain

Cold water, essential for the life cycle of Chinook salmon, is all too often in short supply along the Sacramento River. Two clever innovations have been implemented to conserve cold water into the autumn. First: A 300 foot tall, 250 foot wide “adjustable straw” possessing a series of intake gates enables power plant operators to draw water from behind the dam at three different depths. Second: A 40 foot tall rubber sheet.
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13
Dec

Coyote’s Cache of Intermittent Riches

There’s a common perception in California that more water is always better for fish. Yet many native species possess traits that allow them to persist through harsh, dry summers and cyclical drought. Over the long run, summer releases from reservoirs and urban runoff can harm local fish by laying out a welcome mat for non-native species adapted to perennial flows, Leidy says. “In areas where streams have been altered by humans, where the natural hydrograph has changed, that’s where you see invasives take a foothold.” Coyote Creek’s strictly seasonal flows, and those of other naturally intermittent streams in the state, by contrast, are so extreme in the winter and so sparse in the summer that non-natives simply can’t cope. “It’s...
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05
Oct

Sturgeon Surgeons

“White sturgeon are a popular species, so we want to keep a close eye on contaminants in their tissues.” Recent RMP studies have unearthed a few new interesting things about sturgeon - first that selenium keeps turning up in specimens from certain areas, and second that testing may not have to be deadly. Growing up to 20 feet long and living up to 100 years, today’s living fish have become valuable for the stories that they tell.
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15
Aug

The Second Signal: Guadalupe River Flood Monitoring

It was past midnight when Lester McKee pulled the plug. He’d been watching the weather for days on screen, looking for the perfect storm of conditions he needed to send his team out to sample the Guadalupe River in Santa Clara County. He knew there’d been enough rain already to saturate the soil and surpass annual averages. Zooming in on real-time sensors aimed at Santa Clara Valley Water District reservoirs, he could see they were full enough to spill downstream. On NOAA’s weather site, he found that ten inches of rain were projected to fall on the ridgeline of the Santa Cruz Mountains, and the state’s water resources department was estimating peak flows of 9,000 cubic feet per second in...
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11
Aug

Man’s best friend is being enlisted in efforts to detect the soil-born pathogen responsible for sudden oak death and other rapidly spreading plant and tree diseases.

Phytophthora is difficult to detect in nurseries, plant materials, and planting sites until it has done its damage. To develop early-detection options, H.T. Harvey and Associates are training a female cattle dog/border collie mix named Bolt to sniff out Phytophthora. Part of the Harvey Dog ecological-scent detection program, Bolt has accurately identified four species of Phytophthora in the lab. If her training in a natural setting is successful, Bolt could get to work helping minimize the spread of Phytophthora. Potential beneficiaries would likely include those working to re-oak the parks, open spaces, and backyards of Silicon Valley to improve habitat for native plants and animals.  KMW
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11
Aug

A new Bay Area screening tool helps me wrap my brain around a TMI project.

The day I began editing a monolithic overview of Santa Clara County’s Coyote Watershed I received a gift from my handler. He’d just thrown me for a loop by suggesting we describe not just Coyote Creek’s vast extent and myriad One Water management issues, but also its six sub-watersheds. I asked him to summarize the differences. Rather than composing a detailed memo, or searching water district literature for the materials, he logged into Bay Area Greenprint. Within hours I had six super-organized mini-reports offering maps and metrics on each creekshed. At a glance, I could see acreages, land uses, habitat extent, presence of endangered species, food production, groundwater recharge, wetland and river quality, trails, flood risk, and even climate change...
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08
Aug

Small-scale conservation can have outsized ecological impacts, says an international group of researchers.

Among the small natural features that can have disproportionate ecological value are the bark of grand old trees, which has nooks and crannies that provide microhabitats for wildlife; patches of native plants alongside agricultural fields, which can provide some species with their only remaining natural habitat; and rocky outcrops, which nurture unique and diverse flora and fauna. Other benefits of conserving these modest yet influential—and often under-appreciated—landscape features include relative ease and affordability as well as compatibility with land uses such as grazing and forestry. Even seemingly minor features, the researchers say, can have “roles that may be critical in the function of their broader ecosystems and the fate of biodiversity.” RM
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20
Jun

LA Drainage Goes Native

Community Conservation Solutions is piloting a new analytical tool that not only taps an untapped local water supply — the 969 miles of metropolitan storm drains in Los Angeles — but also has the metrics to earn carbon credits for doing so. “It’s very practical, you just stick your straw in the local water source rather than pumping it into the city from hundreds of miles away,” says the NGO’s director Esther Feldman. The tool helps land and water managers prioritize projects on public lands near stormdrains that use this local water to irrigate and vegetate the urban ecosystem, and to recharge groundwater.
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20
Jun

Deliquescent Summit on Ocean Climate

Walking in the door of the fourth Ocean Climate Summit this May and finding Amy Hutzel, long-time chair of the committee in charge of implementing a conservation plan for the San Francisco Estuary, I asked her what she was doing out of her watershed? “Dipping my toe in the Pacific, “ she said. “For a while now, we’ve been working to build partnerships inland and offshore. It’s all one estuary.”
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09
Mar

Bay Belle Retires; Catamaran Carries On

Side by side at a Redwood City marina, two vessels await their very different destinies. The Research Vessel Polaris, a classy 96-foot yacht, spent decades as the workhorse of the US Geological Survey’s San Francisco Bay science program. Her successor floats next to her in the Redwood City marina, a 67-foot aluminum catamaran named RV David H Peterson for the late oceanographer.
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09
Mar

Keeping the Salt Field at Bay II

After four of California’s driest years on record, our “wet” season was so dry that state water officials panicked.Major reservoirs were drawn way down, and record-low snowpack would limit replenishment to a trickle. Water managers worried about the hot, dry months. Would reservoirs still hold enough for freshwater releases to keep saltwater from pushing deep into the Sacramento-San Joaquin Delta? So they built a barrier to block salt instead.
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16
Dec

No Drought of Dirt

With its massive environmental and economic costs, it’s hard to see a bright side to the California drought. Consider mud, though. According to US Geological Survey scientist David Schoellhamer, the long dry spell may be giving tidal wetland restoration efforts an unexpected boost by promoting the buildup of sediment in the South Bay where former salt ponds await conversion to tidal marsh.
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